Uneconomical Diagnosis of Cladograms: Comments on Wheeler and Nixon's Method for Sankoff Optimization

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/74972/1/j.1096-0031.1997.tb00249.x.pd

Photographic Assessment of Change in Trichotillomania: Psychometric Properties and Variables Influencing Interpretation

Although photographic assessment has been found to be reliable in assessing hair loss in Trichotillomania, the validity of this method is unclear, particularly for gauging progress in treatment. The current study evaluated the psychometric properties of photographic assessment of change in Trichotillomania. Photographs showing hair loss of adults with Trichotillomania were taken before and after participating in a clinical trial for the condition. Undergraduate college students (N = 211) rated treatment response according to the photos, and additional archival data on hair pulling severity and psychosocial health were retrieved from the clinical trial. Photographic assessment of change was found to possess fair reliability (ICC = 0.53), acceptable criterion validity (r = 0.51), good concurrent validity (r = 0.30–0.36), and excellent incremental validity (ΔR2 = 8.67, p \u3c 0.01). In addition, photographic measures were significantly correlated with change in quality of life (r = 0.42), and thus could be considered an index of the social validity of Trichotillomania treatment. Gender of the photo rater and pulling topography affected the criterion validity of photographic assessment (partial η2 = 0.05–0.11). Recommendations for improving photographic assessment and future directions for hair pulling research are discussed

Longevity, body dimension and reproductive mode drive differences in aquatic versus terrestrial life-history strategies

1. Aquatic and terrestrial environments display stark differences in key environmental factors and phylogenetic composition but their consequences for the evolution of species' life-history strategies remain poorly understood. 2. Here, we examine whether and how life-history strategies vary between terrestrial and aquatic species. We use demographic information for 685 terrestrial and 122 aquatic animal and plant species to estimate key life-history traits. We then use phylogenetically corrected least squares regression to explore potential differences in trade-offs between life-history traits between both environments. We contrast life-history strategies of aquatic versus terrestrial species in a principal component analysis while accounting for body dimensions and phylogenetic relationships. 3. Our results show that the same trade-offs structure terrestrial and aquatic life histories, resulting in two dominant axes of variation that describe species' pace of life and reproductive strategies. Terrestrial plants display a large diversity of strategies, including the longest-lived species in this study. Aquatic animals exhibit higher reproductive frequency than terrestrial animals. When correcting for body size, mobile and sessile terrestrial organisms show slower paces of life than aquatic ones. 4. Aquatic and terrestrial species are ruled by the same life-history trade-offs, but have evolved different strategies, likely due to distinct environmental selective pressures. Such contrasting life-history strategies have important consequences for the conservation and management of aquatic and terrestrial species

New constraints on the millimetre emission of six debris discs

The presence of dusty debris around main-sequence stars denotes the existence of planetary systems. Such debris discs are often identified by the presence of excess continuum emission at infrared and (sub-)millimetre wavelengths, with measurements at longer wavelengths tracing larger and cooler dust grains. The exponent of the slope of the disc emission at submillimetre wavelengths, ‘q’, defines the size distribution of dust grains in the disc. This size distribution is a function of the rigid strength of the dust producing parent planetesimals. As a part of the survey ‘PLAnetesimals around TYpical Pre-main seqUence Stars’, we observed six debris discs at 9 mm using the Australian Telescope Compact Array. We obtain marginal (∼3σ) detections of three targets: HD 105, HD 61005 and HD 131835. Upper limits for the three remaining discs, HD 20807, HD 109573 and HD 109085 provide further constraint of the (sub-)millimetre slope of their spectral energy distributions. The values of q (or their limits) derived from our observations are all smaller than the oft-assumed steady-state collisional cascade model (q = 3.5), but lie well within the theoretically expected range for debris discs q ∼ 3–4. The measured q values for our targets are all <3.3, consistent with both collisional modelling results and theoretical predictions for parent planetesimal bodies being ‘rubble piles’ held together loosely by their self-gravity

Newtonian Hydrodynamics of the Coalescence of Black Holes with Neutron Stars I: Tidally locked binaries with a stiff equation of state

We present a detailed study of the hydrodynamical interactions in a Newtonian black hole-neutron star binary during the last stages of inspiral. We consider close binaries which are tidally locked, use a stiff equation of state (with an adiabatic index Gamma=3) throughout, and explore the effect of different initial mass ratios on the evolution of the system. We calculate the gravitational radiation signal in the quadrupole approximation. Our calculations are carried out using a Smooth Particle Hydrodynamics (SPH) code.Comment: Replaces previous version which had figures separate from the text of the paper. Now 47 pages long with 19 embedded figures (the figures are the same, they were renumbered) Uses aaspp4.st

Data incongruence and the problem of avian louse phylogeny

Recent studies based on different types of data (i.e. morphological and molecular) have supported conflicting phylogenies for the genera of avian feather lice (Ischnocera: Phthiraptera). We analyse new and published data from morphology and from mitochondrial (12S rRNA and COI) and nuclear (EF1-) genes to explore the sources of this incongruence and explain these conflicts. Character convergence, multiple substitutions at high divergences, and ancient radiation over a short period of time have contributed to the problem of resolving louse phylogeny with the data currently available. We show that apparent incongruence between the molecular datasets is largely attributable to rate variation and nonstationarity of base composition. In contrast, highly significant character incongruence leads to topological incongruence between the molecular and morphological data. We consider ways in which biases in the sequence data could be misleading, using several maximum likelihood models and LogDet corrections. The hierarchical structure of the data is explored using likelihood mapping and SplitsTree methods. Ultimately, we concede there is strong discordance between the molecular and morphological data and apply the conditional combination approach in this case. We conclude that higher level phylogenetic relationships within avian Ischnocera remain extremely problematic. However, consensus between datasets is beginning to converge on a stable phylogeny for avian lice, at and below the familial rank

Gap Formation in the Dust Layer of 3D Protoplanetary Disks

We numerically model the evolution of dust in a protoplanetary disk using a two-phase (gas+dust) Smoothed Particle Hydrodynamics (SPH) code, which is non-self-gravitating and locally isothermal. The code follows the three dimensional distribution of dust in a protoplanetary disk as it interacts with the gas via aerodynamic drag. In this work, we present the evolution of a disk comprising 1% dust by mass in the presence of an embedded planet for two different disk configurations: a small, minimum mass solar nebular (MMSN) disk and a larger, more massive Classical T Tauri star (CTTS) disk. We then vary the grain size and planetary mass to see how they effect the resulting disk structure. We find that gap formation is much more rapid and striking in the dust layer than in the gaseous disk and that a system with a given stellar, disk and planetary mass will have a different appearance depending on the grain size and that such differences will be detectable in the millimetre domain with ALMA. For low mass planets in our MMSN models, a gap can open in the dust disk while not in the gas disk. We also note that dust accumulates at the external edge of the planetary gap and speculate that the presence of a planet in the disk may facilitate the growth of planetesimals in this high density region.Comment: 5 page, 4 figures. Accepted for publication in Astrophysics & Space Scienc

Taxon ordering in phylogenetic trees by means of evolutionary algorithms

<p>Abstract</p> <p>Background</p> <p>In in a typical "left-to-right" phylogenetic tree, the vertical order of taxa is meaningless, as only the branch path between them reflects their degree of similarity. To make unresolved trees more informative, here we propose an innovative Evolutionary Algorithm (EA) method to search the best graphical representation of unresolved trees, in order to give a biological meaning to the vertical order of taxa.</p> <p>Methods</p> <p>Starting from a West Nile virus phylogenetic tree, in a (1 + 1)-EA we evolved it by randomly rotating the internal nodes and selecting the tree with better fitness every generation. The fitness is a sum of genetic distances between the considered taxon and the <it>r </it>(radius) next taxa. After having set the radius to the best performance, we evolved the trees with (<it>λ </it>+ <it>μ</it>)-EAs to study the influence of population on the algorithm.</p> <p>Results</p> <p>The (1 + 1)-EA consistently outperformed a random search, and better results were obtained setting the radius to 8. The (<it>λ </it>+ <it>μ</it>)-EAs performed as well as the (1 + 1), except the larger population (1000 + 1000).</p> <p>Conclusions</p> <p>The trees after the evolution showed an improvement both of the fitness (based on a genetic distance matrix, then close taxa are actually genetically close), and of the biological interpretation. Samples collected in the same state or year moved close each other, making the tree easier to interpret. Biological relationships between samples are also easier to observe.</p

Political Regimes and Sovereign Credit Risk in Europe, 1750-1913

This article uses a new panel data set to perform a statistical analysis of political regimes and sovereign credit risk in Europe from 1750 to 1913. Old Regime polities typically suffered from fiscal fragmentation and absolutist rule. By the start of World War I, however, many such countries had centralized institutions and limited government. Panel regressions indicate that centralized and?or limited regimes were associated with significant improvements in credit risk relative to fragmented and absolutist ones. Structural break tests also reveal close relationships between major turning points in yield series and political transformations